DrugDevCovid19

Tracking the relevant researches of CADD drug development against COVID-19

Sorafenib

ID MW HBD HBA
216239  464.833
RB NOA Rings logP
8734.07

Function

DrugBank ID:

DB00398


Description:

Sorafenib (rINN), marketed as Nexavar by Bayer, is a drug approved for the treatment of advanced renal cell carcinoma (primary kidney cancer). It has also received "Fast Track" designation by the FDA for the treatment of advanced hepatocellular carcinoma (primary liver cancer), and has since performed well in Phase III trials. [DrugBank]

Targets:

Serine/threonine-protein kinase B-raf (Humans); RAF proto-oncogene serine/threonine-protein kinase (Humans); Vascular endothelial growth factor receptor 3 (Humans); Vascular endothelial growth factor receptor 2 (Humans); Receptor-type tyrosine-protein kinase FLT3 (Humans); Platelet-derived growth factor receptor beta (Humans); Mast/stem cell growth factor receptor Kit (Humans); Fibroblast growth factor receptor 1 (Humans); Proto-oncogene tyrosine-protein kinase receptor Ret (Humans); Vascular endothelial growth factor receptor 1 (Humans) [DrugBank]

Pharmacodynamics:

No large changes in QTc interval were observed. After one 28-day treatment cycle, the largest mean QTc interval change of 8.5 ms (upper bound of two-sided 90% confidence interval, 13.3 ms) was observed at 6 hours post-dose on day 1 of cycle 2. [DrugBank]

Structures

SMILES:

CNC(=O)c1cc(Oc2ccc(NC(=O)Nc3ccc(Cl)c(C(F)(F)F)c3)cc2)ccn1

2D structures:  

3D structures:  

Docking in target protein

Receptor: PL-PRO

Docking Site: S3/S4 pockets

Ligand: Sorafenib

Vina score: -8.8

Off-target analysis based on ligand similarity (Homo sapiens)

Step 1 - Target prediction for Sorafenib: SwissTargetPrediction

Tips: Click on the link to jump to the 'SwissTargetPrediction' webserver. Select the species of 'Homo sapiens', and then paste the SMILES of Sorafenib in the SMILES input box.

Step 2 - Blind docking for Sorafenib: CB-Dock

Tips: Click on the link to jump to the 'CB-Dock' webserver. Upload the structure file of target predicted by 'SwissTargetPrediction' and the 2D/3D structure file of Sorafenib to perform blind docking.