DrugDevCovid19

Tracking the relevant researches of CADD drug development against COVID-19

Saikosaponin U

ID MW HBD HBA
100958092  1269.41920
RB NOA Rings logP
39299-4.90

Function

Not available

Structures

SMILES:

C[C@H]1O[C@@H](OC2CC[C@@]3(C)[C@@H](CC[C@]4(C)[C@@H]3C=CC3=C5C[C@@](C)(C(=O)OC[C@H]6O[C@@H](OCC(O)C(O)C(O)CO)[C@H](O)[C@@H](O)[C@@H]6O)CC[C@]5(CO)[C@H](O)C[C@]34C)[C@]2(C)CO)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H]1O

2D structures:  

3D structures:  

Docking in target protein

Receptor: S-glycoprotein

Docking Site: S2 subunit

Ligand: Saikosaponin U

Vina score: -9

Off-target analysis based on ligand similarity (Homo sapiens)

Step 1 - Target prediction for Saikosaponin U: SwissTargetPrediction

Tips: Click on the link to jump to the 'SwissTargetPrediction' webserver. Select the species of 'Homo sapiens', and then paste the SMILES of Saikosaponin U in the SMILES input box.

Step 2 - Blind docking for Saikosaponin U: CB-Dock

Tips: Click on the link to jump to the 'CB-Dock' webserver. Upload the structure file of target predicted by 'SwissTargetPrediction' and the 2D/3D structure file of Saikosaponin U to perform blind docking.